Bioinformatics Engineer - Oncology & Hematology, IRD (H/F)

<p><strong>About SeqOne</strong></p><p>SeqOne develops next-generation genomics software that turns complex sequencing data into clear, actionable insights for clinicians and researchers. Our platforms power high-impact applications in oncology and rare disease, with a strong focus on robustness, reproducibility, and speed. We are building a world-class team in Montpellier (FR), Paris (FR), and Cambridge (UK).</p><p><strong>Why SeqOne?</strong></p><ul><li><p><strong>Direct Impact:</strong> Your contributions will enhance customer experience and shape the evolution of our genomic products.</p></li><li><p><strong>Stimulating Environment:</strong> Passionate team, innovative projects, and a culture of transparency.</p></li><li><p><strong>Flexibility:</strong> Remote work options, flexible hours, and competitive benefits.</p></li><li><p><strong>Growth Opportunities:</strong> Internal career development, continuous training, and participation in scientific conferences.</p></li><li><p><strong>Soft Skills:</strong> "Unstoppable Positivity" (resilience and solution-first mindset) and "Open Heart, Hands-On" (kindness combined with direct feedback).</p></li></ul><h2>Tasks</h2><p>As a Bioinformatics Engineer, you will design, build, and operate production-<br>grade bioinformatics applications and pipelines. You will partner with research and product teams to translate scientific needs into reliable software, lead code quality efforts (reviews, testing, CI/CD) and help the team adopt best practices so that complex analyses become routine, reproducible and scalable.</p><ul><li><p>Design and develop tools and pipelines for complex biological data.</p></li><li><p>Maintain and improve existing applications while troubleshooting and resolving user issues.</p></li><li><p>Optimize performance and reliability, ensuring reproducible and robust results.</p></li><li><p>Collaborate closely with scientific teams and contribute to publications and presentations.</p></li><li><p>Lead code reviews, enforce coding standards and secure practices.</p></li><li><p>Track new methods/technologies and integrate them when relevant.</p></li><li><p>Share knowledge through documentation creation, training and guidance for both users and teammates.</p></li></ul><h2>Requirements</h2><ul><li><p>Experience mandatory in Bioinformatics.</p></li><li><p>We are seeking candidates with a Master’s degree (Bac+5) in Bioinformatics, CS or a related field and at least 2 years of experience in bioinformatics development.</p></li><li><p>Strong proficiency in Python, UNIX/Linux, and Bash is required.</p></li><li><p>Experience with Workflow managers (Snakemake, Nextflow).</p></li><li><p>Familiarity with Git (branching, PRs, code reviews) as well as Docker for creating reproducible environnements is essential.</p></li><li><p>Candidates should demonstrate clear communication skills, the ability to effectively in a team, autonomy in managing tasks and strong analytical problem-solving abilities.</p></li></ul><p><strong>Nice to have</strong></p><ul><li><p>A PhD or equivalent research experience is a plus.</p></li><li><p>Experience with CI/CD pipelines (GitLab CI, GitHub Actions) is advantageous.</p></li><li><p>Knowledge of environment managers such as pyenv, poet